Uses of Class
geometry.object.SkeletonBranch

Packages that use SkeletonBranch

geometry.object	Package containing all skeleton data structures needed.
io.loader.load2D	Contains all classes used to load a 2D skeleton from the input files.
io.loader.load3D	Contains all classes needed to load a 3D-skeleton.
io.loader.shared	Package containing all classes needed to load 2D skeletons as well as 3D skeletons.

Uses of SkeletonBranch in geometry.object

Fields in geometry.object with type parameters of type SkeletonBranch

private org.jgrapht.graph.SimpleDirectedWeightedGraph<SkeletonNode,SkeletonBranch>

SkeletonGraph.graph the "real" skeleton graph

Methods in geometry.object that return types with arguments of type SkeletonBranch

java.util.Set<SkeletonBranch>

SkeletonGraph.getOutgoingEdges(SkeletonNode node) return the edges emanating from the specified node

Methods in geometry.object with parameters of type SkeletonBranch

boolean	SkeletonGraph.addEdge(SkeletonBranch part) add the specified edge (defined by the SkeletonBranch to the graph.
int	SkeletonBranch.compare(SkeletonBranch o1, SkeletonBranch o2)

Uses of SkeletonBranch in io.loader.load2D

Methods in io.loader.load2D that return SkeletonBranch

private static SkeletonBranch

SampleParts2D.createPart(SkeletonNode startnode, SkeletonNode endnode, java.util.List<SkeletonNode> nodesOnPart) If an end node or junction node has been reached, this function can be used to create the part between the startnode and the current node.

Methods in io.loader.load2D that return types with arguments of type SkeletonBranch

protected java.util.Map<SkeletonNode,java.util.List<SkeletonBranch>>	SkeletonParser2D.sampleParts()
static java.util.List<SkeletonBranch>	SampleParts2D.samplePartsPerStartNode(SkeletonNode startnode, ij.ImagePlus skeletonImage, java.util.List<SkeletonNode> endnodes, java.util.List<SkeletonNode> junctionnodes) Sample all skeleton branches emanating from the specified startnode.

Uses of SkeletonBranch in io.loader.load3D

Methods in io.loader.load3D that return SkeletonBranch

private static SkeletonBranch

SampleParts3D.createPart(SkeletonNode startnode, SkeletonNode endnode, java.util.List<SkeletonNode> nodesOnPart) If an end node or junction node has been reached, this function can be used to create the part between the startnode and the current node.

Methods in io.loader.load3D that return types with arguments of type SkeletonBranch

protected java.util.Map<SkeletonNode,java.util.List<SkeletonBranch>>	SkeletonParser3D.sampleParts()
static java.util.List<SkeletonBranch>	SampleParts3D.samplePartsPerStartNode(SkeletonNode startnode, int[][][] thinningcube, java.util.List<SkeletonNode> endnodes, java.util.List<SkeletonNode> junctionnodes, double widthDim, double heightDim, double depthDim) sample all skeleton parts emanating from the specified startnode which has to be a critical node, that is, either end node or junction node.

Uses of SkeletonBranch in io.loader.shared

Methods in io.loader.shared that return types with arguments of type SkeletonBranch

protected abstract java.util.Map<SkeletonNode,java.util.List<SkeletonBranch>>

SkeletonParser.sampleParts() sample all SkeletonBranches emanating from each critical node.

Method parameters in io.loader.shared with type arguments of type SkeletonBranch

static SkeletonGraph

GraphBuilder.buildGraph(java.util.Map<SkeletonNode,java.util.List<SkeletonBranch>> allParts) Build a graph from the sampled parts.