Uses of Class
geometry.object.SkeletonObject

Packages that use SkeletonObject

algorithm	Package containing all classes that are part of establishing correspondences between two skeletons' end nodes.
algorithm.matching	Package containing all classes that are used to establish a final matching between two skeletons' end nodes.
algorithm.psgm	All classes used for the computation of two skeletons' endnode similarities, as described in the paper.
io.loader.shared	Package containing all classes needed to load 2D skeletons as well as 3D skeletons.
io.out	Classes needed to save skeletons to the file system.
io.visualize	Classes needed to visualize/show skeletons and skeleton matching results.
retrieval	Classes needed to perform similarity searches in a database and mapping database entries to java classes.
test.algorithm	Test basic functionalities of the algorithm implementations.
test.retrieval	Test classes for retrieval scenarios.

Uses of SkeletonObject in algorithm

Fields in algorithm declared as SkeletonObject

private SkeletonObject	CleanMatchingResult.queryobject the query object - the one that was the first skeleton in the user input
private SkeletonObject	Matching3D.so1 first, "smaller" skeleton object (the one with less end nodes
private SkeletonObject	Matching2D.so1 the first skeleton object (the one with lesser end nodes
private SkeletonObject	PathSimilaritySkeletonGraphMatching.so1 Deprecated. the first skeleton object (the one with lesser end nodes
private SkeletonObject	Matching2D.so1_flipped the first skeleton object, read from an image flipped horizontally
private SkeletonObject	PathSimilaritySkeletonGraphMatching.so1_flipped Deprecated. the first skeleton object, read from an image flipped horizontally
private SkeletonObject	Matching3D.so2 second, " bigger" skeleton object (the one with more end nodes)
private SkeletonObject	Matching2D.so2 the second skeleton object (the one with more end nodes
private SkeletonObject	PathSimilaritySkeletonGraphMatching.so2 Deprecated. the second skeleton object (the one with more end nodes
private SkeletonObject	CleanMatchingResult.targetobject the target object - the one that was the second skeleton in the user input

Methods in algorithm that return SkeletonObject

SkeletonObject	CleanMatchingResult.getQueryobject() Get the query object
SkeletonObject	Matching2D.getSo1_flipped() Get the first skeleton (the one with lesser end nodes), but flipped horizontally)
SkeletonObject	Matching2D.getSo1() Get the "first skeleton", the one with lesser end nodes.
SkeletonObject	Matching2D.getSo2() Get the "second skeleton", the one with more end nodes
SkeletonObject	CleanMatchingResult.getTargetobject() Get the target object.

Methods in algorithm with parameters of type SkeletonObject

void	CleanMatchingResult.setQueryobject(SkeletonObject queryobject) Set the query object.
void	Matching2D.setSo1_flipped(SkeletonObject so1_flipped) Set the first skeleton (the one with lesser end nodes), but flipped horizontally)
void	Matching2D.setSo1(SkeletonObject so1) Set the "first skeleton", the one with lesser end nodes.
void	Matching2D.setSo2(SkeletonObject so2) Set the "second skeleton", the one with lesser end nodes.
void	CleanMatchingResult.setTargetobject(SkeletonObject targetobject) Set the Target object

Constructors in algorithm with parameters of type SkeletonObject

Matching2D(SkeletonObject so1, SkeletonObject so1_flipped, SkeletonObject so2, Config config)
Constructor that should only be used if you know what you are doing.

PathSimilaritySkeletonGraphMatching(SkeletonObject so1, SkeletonObject so1_flipped, SkeletonObject so2)
Deprecated. Constructor.

Uses of SkeletonObject in algorithm.matching

Fields in algorithm.matching declared as SkeletonObject

private SkeletonObject	MultipleOSB.so1 Deprecated. first skeleton to be matched
private SkeletonObject	OSBfinalMatching.so1 the first skeleton to be matched
private SkeletonObject	MultipleOSB.so2 Deprecated. second skeleton to be matched
private SkeletonObject	OSBfinalMatching.so2 the second skeleton to be matched

Methods in algorithm.matching with parameters of type SkeletonObject

private java.util.List<SkeletonNode>

OSBfinalMatching.orderEndNodes(SkeletonObject so, SkeletonNode node) Order the skeleton's end nodes according to their distance to the specified node, measured by the length of the skeleton path between the two nodes.

Constructors in algorithm.matching with parameters of type SkeletonObject

MultipleOSB(SkeletonObject so1, SkeletonObject so2)
Deprecated. Constructor.

OSBfinalMatching(SkeletonObject so1, SkeletonObject so2)
Constructor.

Uses of SkeletonObject in algorithm.psgm

Fields in algorithm.psgm declared as SkeletonObject

private SkeletonObject	PSGM.so1 first skeleton object
private SkeletonObject	CostGetter.so1 first skeleton object to be matched
private SkeletonObject	PSGMResult.so1 the "smaller" skeleton object (with less end nodes)
private SkeletonObject	PSGMResult.so1_flipped the "smaller" skeleton object (with less end nodes) parsed from flipped image
private SkeletonObject	PSGM.so2 second skeleton object
private SkeletonObject	CostGetter.so2 second skeleton object to be matched
private SkeletonObject	PSGMResult.so2 the "bigger" skeleton object (with more end nodes)

Methods in algorithm.psgm that return SkeletonObject

SkeletonObject	PSGM.getSo1() Get the first skeleton object.
SkeletonObject	PSGM.getSo2() Get the second skeleton object.

Methods in algorithm.psgm with parameters of type SkeletonObject

static void	SkeletonPathGetter.getAllSkeletonPathVectors(SkeletonObject so1, SkeletonObject so2) use this function to set the skeletons' skeleton path vectors.
static void	SkeletonPathGetter.getAllSkeletonPathVectors(SkeletonObject so1, SkeletonObject so2, int numberOfSamplePoints) use this function to set the skeletons' skeleton path vectors.
private double	CostGetter.getMaximalPathLength(SkeletonObject so) get the length of the longest path in the specified skeleton object.
private static double	SkeletonPathGetter.getNormalization(SkeletonObject so) to make sure the approach is scale - invariant, get a normalization factor based on the average distance of any object pixel to the contour.
private static int	SkeletonPathGetter.getNumberOfSamplePoints(SkeletonObject so1, SkeletonObject so2) Deprecated.
static void	SkeletonPathGetter.getSkeletonPathRepresentation(SkeletonObject so, SkeletonPath path, int numberOfSamplePoints, double normalization) get the path vector representation for the specified skeleton path.
private static void	SkeletonPathGetter.getSkeletonPathVectors(SkeletonObject so, int numberOfSamplePoints) helper function to get skeleton path vectors for the specified skeleton.
private void	PSGM.setSkeletons(SkeletonObject so1, SkeletonObject so2) set the skeletons to be matched.
void	PSGMResult.setSo1_flipped(SkeletonObject so1Flipped) Set the flipped version of the "smaller" skeleton.
void	PSGMResult.setSo1(SkeletonObject so1) Set the first skeleton, that is, the one with lesser end nodes.
void	PSGMResult.setSo2(SkeletonObject so2) Set the second skeleton, that is, the one with more end nodes.

Constructors in algorithm.psgm with parameters of type SkeletonObject

CostGetter(SkeletonObject so1, SkeletonObject so2, Config config)
Constructor.

PSGM(SkeletonObject so1, SkeletonObject so2)
Constructor.

Uses of SkeletonObject in io.loader.shared

Fields in io.loader.shared declared as SkeletonObject

protected SkeletonObject	SkeletonParser.skeletonObject meta skeleton object
private SkeletonObject	SkeletonParserThread.so the parsed skeleton object

Methods in io.loader.shared that return SkeletonObject

SkeletonObject	SkeletonParser.getSkeleton() parse the skeleton and return it, according to the specified parameters.
SkeletonObject	SkeletonParserThread.getSkeleton() get the parsed skeleton

Methods in io.loader.shared with parameters of type SkeletonObject

static void	Preprocessor.deleteSpuriousBranches(SkeletonObject so, Config config) Delete all branches that emanate from an end node and are shorter than the parameter listed in the configuration.
static double	Preprocessor.getEmanatingBranchLength(SkeletonObject so, SkeletonNode endnode) Get the length of the skeleton branch emanating from the specified skeleton end node

Uses of SkeletonObject in io.out

Methods in io.out with parameters of type SkeletonObject

static void

SkeletonToImageWriter.write(SkeletonObject obj, java.lang.String filename) create an image from the specified skeleton object and save the result to the specified location.

Uses of SkeletonObject in io.visualize

Fields in io.visualize declared as SkeletonObject

private SkeletonObject	MatchingViewer.so1 the first skeleton object that has been matched
private SkeletonObject	MatchingViewer.so2 the second skeleton object that has been matched

Methods in io.visualize with parameters of type SkeletonObject

private vtk.vtkActor	MatchingViewer3DPanel.createSkeletonActor(int[][][] cube, SkeletonObject so) Create a skeleton actor from the 3D thinning cube.
private vtk.vtkActor	MatchingViewer3D.createSkeletonActor(int[][][] cube, SkeletonObject so) create an actor for a 3D skeleton cube.
private vtk.vtkActor	MatchingViewer3DPanel.createSurfaceActor(SkeletonObject so) Create an actor for the volume's surface.
private static void	SkeletonToBufferedImage.setContourPixel(java.awt.image.BufferedImage bimg, SkeletonObject o) set the contour pixel.
private void	MatchingViewer.setContourPixel(SkeletonObject so, int totalOffsetX, int totalOffsetY) set the contour pixel in the buffered image.
private static void	SkeletonToBufferedImage.setSkeletonPixel(java.awt.image.BufferedImage bimg, SkeletonObject o) set the skeleton pixel.
private void	MatchingViewer.setSkeletonPixel(SkeletonObject so, int totalOffsetX, int totalOffsetY) set the object's skeleton pixel.
private int[][][]	MatchingViewer3DPanel.SkeletonTo3DArray(SkeletonObject so) Create a 3D cube from the specified skeleton.
private int[][][]	MatchingViewer3D.SkeletonTo3DArray(SkeletonObject so) Create a 3D cube from the specified skeleton.
static java.awt.image.BufferedImage	SkeletonToBufferedImage.skeletonToImage(SkeletonObject o) create a nice image for the specified skeleton.

Constructors in io.visualize with parameters of type SkeletonObject

MatchingViewer(SkeletonObject so1, SkeletonObject so2, MatchList ml)
constructor.

Uses of SkeletonObject in retrieval

Fields in retrieval declared as SkeletonObject

private SkeletonObject	SearchThread.so the query skeleton object to be compared
private SkeletonObject	SimilaritySearchResult.so the target object
private SkeletonObject	SearchThread.so_flipped the query skeleton object, parsed from flipped image

Methods in retrieval that return SkeletonObject

SkeletonObject

SimilaritySearchResult.getSo() Get the target skeleton object.

Methods in retrieval with parameters of type SkeletonObject

static java.util.PriorityQueue<SimilaritySearchResult>

SimilaritySearch.getSimilarities(java.lang.String database, SkeletonObject so, SkeletonObject so_flipped, java.lang.String skeletonfilename, java.lang.String objectfilename, int nosp, double alpha) Given a skeleton object, this function searches the database in src/database/database.db, performes PSGM to the input skeleton and all skeletons in the database and saves the results in the order of their similarity in a priority queue.

void

SimilaritySearchResult.setSo(SkeletonObject so) Set the target skeleton object

Constructors in retrieval with parameters of type SkeletonObject

SearchThread(SkeletonObject so, SkeletonObject so_flipped, java.lang.String skeletonfilename1, java.lang.String objectfilename1, java.lang.String skeletonfilename2, java.lang.String objectfilename2, java.lang.String category, int nosp, double alpha, java.util.PriorityQueue<SimilaritySearchResult> results)
create a new search thread.

Uses of SkeletonObject in test.algorithm

Fields in test.algorithm declared as SkeletonObject

private SkeletonObject	SinglePathDistanceMatrixTest.so1 first skeleton object
private SkeletonObject	PSGMTest.so1
private SkeletonObject	SinglePathDistanceMatrixTest.so2 second skeleton object
private SkeletonObject	PSGMTest.so2

Uses of SkeletonObject in test.retrieval

Fields in test.retrieval declared as SkeletonObject

private SkeletonObject

SimilaritySearchTest.so1 query skeleton